An R package to fit and plot Species Sensitivity Distributions (SSDs)

Standardising toxicity data

The rebirth of IMPACT World+ in a fully automated and transparent fashion.

A collection of transformer-based models and developmental scripts presented in the publication "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

Bayesian No-Effect-Concentration estimation in R

web based multi-agent simulator for individual-based modeling in population dynamics and ecotoxicology

Miscellaneous Functions for Environmental Analyses

✨📦👩‍💻 shinyssd v1.0: Species Sensitivity Distributions for Ecotoxicological Risk Assessment - R-Shiny app

This project repository is connected to the journal article ‘A Novel Multi-Species Toxicokinetic Modeling Approach in Support of Chemical Risk Assessment’ by Mangold-Döring et al. 2021. The key element of this repository is the Jupyter Notebook with the model code (Multi-species-PBTK-model.ipynb), in which you will find a more detailed descripti…

An R package to simulate ecotox TK/TD models, calculate effects, derive effect profiles, and to fit model parameters to observed data.

Example R scripts to create a dose-response curve and extract ECx-values.

Source code for the web application associated with "Transformers enable accurate prediction of acute and chronic chemical toxicity in aquatic organisms".

Paper - Effect of the plastic pollutant bisphenol A on the biology of aquatic organisms: A meta-analysis

This project aims to be a handler for input creation and running of multiple RICEWQ simulations.

Biochemical biomarker analysis of mussels from 74 sites across Puget Sound from the WDFW 'Mussel Watch' program.

REcoTox is a semi-automated, interactive R workflow to process US EPA ECOTOX Knowledgebase entire database ASCII files

ML pipeline for counting Collembola organisms in ecotoxicity soil slide images

Refactored version of the drc package, a framework for fitting and analyzing dose–response models. This repository restructures the codebase to improve maintainability, transparency, and future development.

Prediction of chronic SSD

ToMEx 2.0 Ecological Risk Assessment (PSSD++)